Analysing I/O bottlenecks in LHC data analysis on grid storage resources

We describe recent I/O testing frameworks that we have developed and applied within the UK GridPP Collaboration, the ATLAS experiment and the DPM team, for a variety of distinct purposes. These include benchmarking vendor supplied storage products, discovering scaling limits of SRM solutions, tuning of storage systems for experiment data analysis, evaluating file access protocols, and exploring I/O read patterns of experiment software and their underlying event data models. With multiple grid sites now dealing with petabytes of data, such studies are becoming essential. We describe how the tests build, and improve, on previous work and contrast how the use-cases differ. We also detail the results obtained and the implications for storage hardware, middleware and experiment software

The EU and Asia within an evolving global order: what is Europe? Where is Asia?

The papers in this special edition are a very small selection from those presented at the EU-NESCA (Network of European Studies Centres in Asia) conference on "the EU and East Asia within an Evolving Global Order: Ideas, Actors and Processes" in November 2008 in Brussels. The conference was the culmination of three years of research activity involving workshops and conferences bringing together scholars from both regions primarily to discuss relations between Europe and Asia, perceptions of Europe in Asia, and the relationship between the European regional project and emerging regional forms in Asia. But although this was the last of the three major conferences organised by the consortium, it in many ways represented a starting point rather than the end; an opportunity to reflect on the conclusions of the first phase of collaboration and point towards new and continuing research agendas for the future

A preliminary investigation of the water use efficiency of sweet sorghum for biofuel in South Africa

Sweet sorghum (Sorghum bicolor (L.) Moench) has been recognized globally as a potential biofuel crop for ethanol production. Sweet sorghum is a drought-tolerant crop that is widely adapted to different environmental growing conditions. The aim of this study was to determine the water use efficiency (utilisable yield per unit amount of water used) of drip-irrigated sweet sorghum (variety Sugargraze) under two different climatic conditions in South Africa. The sweet sorghum trials were conducted at Ukulinga research farm (University of KwaZulu-Natal, Pietermaritzburg) and Hatfield experimental farm (University of Pretoria, Pretoria), South Africa. Field trials were conducted in two successive seasons, viz., 2010/11 and 2011/12. Seasonal water use was estimated using eddy covariance and surface renewal methods. Fresh and dry aboveground biomass yield, stalk yield and stalk Brix % were measured at final harvest. Theoretical ethanol yield was calculated from fresh stalk yield and Brix %. Water use for the two growing seasons was 415 mm at Ukulinga and 398 mm at Hatfield. The ethanol water use efficiency (WUE) values for the sweet sorghum at Ukulinga were 0.27 and 0.60 L∙m-3 for 2010/11 and 2011/12 growing seasons, respectively. The ethanol WUE estimate of the sweet sorghum at Hatfield was 0.53 L∙m-3 for the 2010/11 season and 0.70 L∙m-3 for the 2011/12 growing season. WUE estimates of the sweet sorghum crop were higher for Hatfield compared to Ukulinga research farm. The results from this study showed that the WUE of sweet sorghum was sensitive to plant density. The WUE values confirm that sweet sorghum has high WUE under different climatic conditions.Keywords: water use efficiency; ethanol yield; biofuel crop; plant density, sweet sorghum, South Afric

Chemical fingerprints encode mother-offspring similarity, colony membership, relatedness and genetic quality in fur seals

Chemical communication underpins virtually all aspects of vertebrate social life, yet remains poorly understood because of its highly complex mechanistic basis. We therefore used chemical fingerprinting of skin swabs and genetic analysis to explore the chemical cues that may underlie mother–offspring recognition in colonially breeding Antarctic fur seals. By sampling mother–offspring pairs from two different colonies, using a variety of statistical approaches and genotyping a large panel of microsatellite loci, we show that colony membership, mother–offspring similarity, heterozygosity, and genetic relatedness are all chemically encoded. Moreover, chemical similarity between mothers and offspring reflects a combination of genetic and environmental influences, the former partly encoded by substances resembling known pheromones. Our findings reveal the diversity of information contained within chemical fingerprints and have implications for understanding mother–offspring communication, kin recognition, and mate choice

Improving risk prediction model quality in the critically ill:data linkage study

Background: A previous National Institute for Health and Care Research study [Harrison DA, Ferrando-Vivas P, Shahin J, Rowan KM. Ensuring comparisons of health-care providers are fair: development and validation of risk prediction models for critically ill patients. Health Serv Deliv Res 2015;3(41)] identified the need for more research to understand risk factors and consequences of critical care and subsequent outcomes. Objectives: First, to improve risk models for adult general critical care by developing models for mortality at fixed time points and time-to-event outcomes, end-stage renal disease, type 2 diabetes, health-care utilisation and costs. Second, to improve risk models for cardiothoracic critical care by enhancing risk factor data and developing models for longer-term mortality. Third, to improve risk models for in-hospital cardiac arrest by enhancing risk factor data and developing models for longer-term mortality and critical care utilisation. Design: Risk modelling study linking existing data. Setting: NHS adult critical care units and acute hospitals in England. Participants: Patients admitted to an adult critical care unit or experiencing an in-hospital cardiac arrest. Interventions: None. Main outcome measures: Mortality at hospital discharge, 30 days, 90 days and 1 year following critical care unit admission; mortality at 1 year following discharge from acute hospital; new diagnosis of end-stage renal disease or type 2 diabetes; hospital resource use and costs; return of spontaneous circulation sustained for > 20 minutes; survival to hospital discharge and 1 year; and length of stay in critical care following in-hospital cardiac arrest. Data sources: Case Mix Programme, National Cardiac Arrest Audit, UK Renal Registry, National Diabetes Audit, National Adult Cardiac Surgery Audit, Hospital Episode Statistics and Office for National Statistics. Results: Data were linked for 965,576 critical care admissions between 1 April 2009 and 31 March 2016, and 83,939 in-hospital cardiac arrests between 1 April 2011 and 31 March 2016. For admissions to adult critical care units, models for 30-day mortality had similar predictors and performance to those for hospital mortality and did not reduce heterogeneity. Models for longer-term outcomes reflected increasing importance of chronic over acute predictors. New models for end-stage renal disease and diabetes will allow benchmarking of critical care units against these important outcomes and identification of patients requiring enhanced follow-up. The strongest predictors of health-care costs were prior hospitalisation, prior dependency and chronic conditions. Adding pre- and intra-operative risk factors to models for cardiothoracic critical care gave little improvement in performance. Adding comorbidities to models for in-hospital cardiac arrest provided modest improvements but were of greater importance for longer-term outcomes. Limitations: Delays in obtaining linked data resulted in the data used being 5 years old at the point of publication: models will already require recalibration. Conclusions: Data linkage provided enhancements to the risk models underpinning national clinical audits in the form of additional predictors and novel outcomes measures. The new models developed in this report may assist in providing objective estimates of potential outcomes to patients and their families. Future work: (1) Develop and test care pathways for recovery following critical illness targeted at those with the greatest need; (2) explore other relevant data sources for longer-term outcomes; (3) widen data linkage for resource use and costs to primary care, outpatient and emergency department data

A preliminary investigation of the water use efficiency of sweet sorghum for biofuel in South Africa

Sweet sorghum (Sorghum bicolor (L.) Moench) has been recognized globally as a potential biofuel crop for ethanol production. Sweet sorghum is a drought-tolerant crop that is widely adapted to different environmental growing conditions. The aim of this study was to determine the water use efficiency (utilisable yield per unit amount of water used) of drip-irrigated sweet sorghum (variety Sugargraze) under two different climatic conditions in South Africa. The sweet sorghum trials were conducted at Ukulinga research farm (University of KwaZulu-Natal, Pietermaritzburg) and Hatfield experimental farm (University of Pretoria, Pretoria), South Africa. Field trials were conducted in two successive seasons, viz., 2010/11 and 2011/12. Seasonal water use was estimated using eddy covariance and surface renewal methods. Fresh and dry aboveground biomass yield, stalk yield and stalk Brix % were measured at final harvest. Theoretical ethanol yield was calculated from fresh stalk yield and Brix %. Water use for the two growing seasons was 415 mm at Ukulinga and 398 mm at Hatfield. The ethanol water use efficiency (WUE) values for the sweet sorghum at Ukulinga were 0.27 and 0.60 L∙m-3 for 2010/11 and 2011/12 growing seasons, respectively. The ethanol WUE estimate of the sweet sorghum at Hatfield was 0.53 L∙m-3 for the 2010/11 season and 0.70 L∙m-3 for the 2011/12 growing season. WUE estimates of the sweet sorghum crop were higher for Hatfield compared to Ukulinga research farm. The results from this study showed that the WUE of sweet sorghum was sensitive to plant density. The WUE values confirm that sweet sorghum has high WUE under different climatic conditions.The research presented in this paper forms part of a solicited research project (Water use of cropping systems adapted to bio-climatic regions in South Africa and suitable for biofuel production) that was initiated by the Water Research Commission (WRC) of South Africa in Key Strategic Area on Water Utilisation in Agriculture).Water Research Commission (WRC) of South Africahttp://www.wrc.org.zaam2016Plant Production and Soil Scienc

Measurement of the Bs0B^{0}_{s} Lifetime Using Semileptonic Decays

We report a measurement of the $B^0_{s}$ lifetime in the semileptonic decay channel $B^0_{s}\to D^-_s \mu^{+}\nu X$ (and its charge conjugate), using approximately 0.4 fb$^{-1}$ of data collected with the D0 detector during 2002 -- 2004. We have reconstructed 5176 $D^-_s \mu^{+}$ signal events, where the $D_s^-$ is identified via the decay $D_s^-\to \phi\pi^-$, followed by $\phi\to K^+ K^-$. Using these events, we have measured the $B^0_s$ lifetime to be $\tau(B^0_{s}) = 1.398 \pm 0.044$ $({stat}) ^{+0.028}_{-0.025}$ $({syst}) {ps}$. This is the most precise measurement of the $B_s^0$ lifetime to date.Comment: To appear in Phys. Rev. Lett., 7 pages, 2 figure